Scripts for Working with the IGV Browser

Our friends at H3 Biomedicine developed a trio of scripts optimized for using GTFuse with the Integrative Genomics Viewer (IGV).

Use this script if you already know which region you are interested in viewing. The tool will mount your file, cache the region you specify, and create a symlink that IGV can use. You may find this approach faster than using the GTFuse command line. 

Note that the scripts are written for use with GNOS versions 3.9 and below.

The scripts are available on GitHub, check it out!

 

 

 

Have more questions? Submit a request

0 Comments

Article is closed for comments.
Powered by Zendesk